Eduardo Conde-Sousa | Data Scientist @ P95

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Publications list

Publications in peer reviewed journals

  1. Manubens-Gil L., et al., BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets. Nat Methods (2023). DOI: 10.1038/s41592-023-01848-5

  2. Antão-Sousa S., Conde-Sousa E., Gusmão L., Amorim A., Pinto, N., How frequently are Autosomal and X-STRs multistep mutations perceived as single-step? Forensic Science International: Genetics Supplement Series, 2022, 8, pp. 165–166 DOI:10.1016/j.fsigss.2022.10.022

  3. Antão-Sousa S., Conde-Sousa E., Gusmão L., Amorim A., Pinto, N., How often have X- and autosomal-STRs mutations equivocal parental origin been assigned? Forensic Science International: Genetics Supplement Series, 2022, 8, pp. 99–101 DOI: 10.1016/j.fsigss.2022.09.035

  4. Antão-Sousa S., Conde-Sousa E., Gusmão L., Amorim A., Pinto, N., Estimations of Mutation Rates Depend on Population Allele Frequency Distribution: The Case of Autosomal Microsatellites Genes, 2022, 13(7), 1248 DOI: 10.3390/genes13071248

  5. Conde-Sousa E., Vale J., Feng M., Xu K., Wang Y., Della Mea V., La Barbera D., Montahaei E., Baghshah M., Turzynski A., Gildenblat J., Klaiman E., Hong Y., Aresta G., Araújo T., Aguiar P., Eloy C., Polónia A., HEROHE Challenge: Predicting HER2 Status in Breast Cancer from Hematoxylin–Eosin Whole-Slide Imaging. 2022, J. Imaging, 8, 213. DOI: 10.3390/jimaging8080213

  6. Pereira-Castro I., Garcia B., Curinha A., Neves-Costa A., Conde-Sousa E., Moita L., Moreira A., MCL1 alternative polyadenylation is essential for cell survival and mitochondria morphology (2022) Cellular and Molecular Life Sciences 79, 164. ; DOI: 10.1007/s00018-022-04172-x

  7. Neto, L., Pinto, N., Proença, A., Amorim, A., Conde-Sousa, E., 4SpecID: Reference DNA Libraries Auditing and Annotation System for Forensic Applications (2021) Genes, 12, 61.; DOI: 10.3390/genes12010061

  8. Freitas A., Aroso M., Barros A., Fernandez M., Conde-Sousa E., Leite M., Carvalho E., Ribeiro C. C., Ferreira R., Pêgo A. P., Vitorino R., Gomez-Lazaro M., Characterization of the striatal extracellular matrix in a mouse model of Parkinson’s disease (2021) Antioxidants, 10(7), 1095; DOI: 10.3390/antiox10071095

  9. Nelson, G. et al. QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy, (2021) J. Microscopy; DOI: 10.1111/jmi.13041 arXiv: arXiv:2101.09153 [q-bio.OT]

  10. La Barbera, D., Polónia, A., Roitero, K., Conde-Sousa , E., Della Mea, V. Detection of HER2 from Haematoxylin-Eosin Slides Through a Cascade of Deep Learning Classifiers via Multi-Instance Learning (2020) J. Imaging, 6(9), 82; DOI: 10.3390/jimaging6090082

  11. Vieira, D., Esteves,S., Santiago,C, Conde-Sousa, E., Fernandes, T., Pais, C., Soares, P., Franco-Duarte, R. Population analysis and evolution of Saccharomyces cerevisiae mitogenomes (2020) Microorganisms, 8(7), 1001; DOI: 10.3390/microorganisms8071001

  12. Conde-Sousa, E., Pinto, N., Amorim, A. Reference DNA databases for forensic species identification: Auditing algorithms (2019) Forensic Science International: Genetics Supplement Series, 7 (1), pp. 564-566. DOI: 10.1016/j.fsigss.2019.10.091

  13. Antão-Sousa, S., Conde-Sousa, E., Gusmão, L., Amorim, A., Pinto, N. Underestimation and misclassification of mutations at X chromosome STRs depend on population’s allelic profile (2019) Forensic Science International: Genetics Supplement Series, 7 (1), pp. 718-720. DOI: 10.1016/j.fsigss.2019.10.150

  14. Barros, D., Conde-Sousa, E., Gonçalves, A.M., Han, W.M., García, A.J., Amaral, I.F., Pêgo, A.P. Engineering hydrogels with affinity-bound laminin as 3D neural stem cell culture systems (2019) Biomaterials Science, 7 (12), pp. 5338-5349. DOI: 10.1039/c9bm00348g

  15. Rito, T., Vieira, D., Silva, M., Conde-Sousa, E., Pereira, L., Mellars, P., Richards, M.B., Soares, P. A dispersal of Homo sapiens from southern to eastern Africa immediately preceded the out-of-Africa migration (2019) Scientific Reports, 9 (1), art. no. 4728. DOI: 10.1038/s41598-019-41176-3

  16. Pinto, N., Simões, R., Amorim, A., Conde-Sousa, E. Optimizing the information increase through the addition of relatives and genetic markers in identification and kinship cases (2019) Forensic Science International: Genetics, 40, pp. 210-218. DOI: 10.1016/j.fsigen.2019.02.019

  17. Barros, D., Parreira, P., Furtado, J., Ferreira-da-Silva, F., Conde-Sousa, E., García, A.J., Martins, M.C.L., Amaral, I.F., Pêgo, A.P. An affinity-based approach to engineer laminin-presenting cell instructive microenvironments (2019) Biomaterials, 192, pp. 601-611. DOI: 10.1016/j.biomaterials.2018.10.039

  18. Machado, P., Gusmão, L., Conde-Sousa, E., Pinto, N. The influence of the different mutation models in kinship evaluation (2017) Forensic Science International: Genetics Supplement Series, 6, pp. e255-e256. DOI: 10.1016/j.fsigss.2017.09.093

  19. Gonçalves, J., Conde-Sousa, E., Egeland, T., Amorim, A., Pinto, N. Key individuals for discerning pedigrees belonging to the same autosomal kinship class (2017) Forensic Science International: Genetics, 29, pp. 71-79. DOI: 10.1016/j.fsigen.2017.03.018

  20. Olivieri, A., Sidore, C., Achilli, A., Angius, A., Posth, C., Furtwängler, A., Brandini, S., Capodiferro, M.R., Gandini, F., Zoledziewska, M., Pitzalis, M., Maschio, A., Busonero, F., Lai, L., Skeates, R., Gradoli, M.G., Beckett, J., Marongiu, M., Mazzarello, V., Marongiu, P., Rubino, S., Rito, T., Macaulay, V., Semino, O., Pala, M., Abecasis, G.R., Schlessinger, D., Conde-Sousa, E., Soares, P., Richards, M.B., Cucca, F., Torroni, A. Mitogenome Diversity in Sardinians: A Genetic Window onto an Island’s Past (2017) Molecular Biology and Evolution, 34 (5), pp. 1230-1239. DOI: 10.1093/molbev/msx082

  21. Conde-Sousa, E., Szücs, P., Peng, H., Aguiar, P. N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions (2017) Neuroinformatics, 15 (1), pp. 5-12. DOI: 10.1007/s12021-016-9308-7

  22. Conde-Sousa, E., Aguiar, P. A working memory model for serial order that stores information in the intrinsic excitability properties of neurons (2013) Journal of Computational Neuroscience, 35 (2), pp. 187-199. DOI: 10.1007/s10827-013-0447-7

  23. Pinto, N., Magalhães, M., Conde-Sousa, E., Gomes, C., Pereira, R., Alves, C., Gusmão, L., Amorim, A. Assessing paternities with inconclusive STR results: The suitability of bi-allelic markers (2013) Forensic Science International: Genetics, 7 (1), pp. 16-21. DOI: 10.1016/j.fsigen.2012.05.002

Publications in conference proceedings

  1. Conde-Sousa E., Aguiar P., Conversion from spatial patterns of activity to sequences of neuronal activations using gate interneurons, BMC Neuroscience, July 2013, 14(Suppl.1) DOI: 10.1186/1471-2202-14-S1-P3

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