Eduardo Conde-Sousa | Data Scientist @ P95

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Publications list

Publications in peer reviewed journals

  1. Nguyen J. L., Mitratza M., Volkman H. R., de Munter L., Tran T. M. P., Marques C., Mustapha M., Valluri S., Yang J., Antón A., Casas I., Conde-Sousa E., Drikite L., Grüner B., Icardi G., ten Kate G. L., Martin C. Mira-Iglesias A., Orrico-Sánchez A., Otero-Romero S., Rohde G., Jodar L., McLaughlin J. M., Bollaerts K. Effectiveness of the BNT162b2 XBB.1.5-adapted vaccine against COVID-19 hospitalization related to the JN.1 variant in Europe: a test-negative case-control study using the id.DRIVE platform, eClinicalMedicine, DOI: 10.1016/j.eclinm.2024.102995

  2. Manubens-Gil L., et al., Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets, Nature Methods, 21, 1959, (2024). DOI: 10.1038/s41592-023-01848-5

  3. Schmied, C., Nelson, M.S., Avilov, S. et al. Community-developed checklists for publishing images and image analyses. Nat Methods 21, 170–181 (2024). DOI: 10.1038/s41592-023-01987-9

  4. Meeraus W., Stuurman A.L., Durukal I., Conde-Sousa E., Lee A., Santa Maria A., Furtado B. E., Ouwens M., Gray C. M., Valverde D. A., Silva H. G., Taylor S. COVID-19 vaccine booster doses provide increased protection against COVID-19 hospitalization compared with previously vaccinated individuals: Interim findings from the REFORCO-Brazil real-world effectiveness study during Delta and Omicron, Vaccine (2023) DOI: 10.1016/j.vaccine.2023.08.085

  5. Manubens-Gil L., et al., BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets. Nat Methods (2023). DOI: 10.1038/s41592-023-01848-5

  6. Antão-Sousa S., Conde-Sousa E., Gusmão L., Amorim A., Pinto, N., How frequently are Autosomal and X-STRs multistep mutations perceived as single-step? Forensic Science International: Genetics Supplement Series, 2022, 8, pp. 165–166 DOI:10.1016/j.fsigss.2022.10.022

  7. Antão-Sousa S., Conde-Sousa E., Gusmão L., Amorim A., Pinto, N., How often have X- and autosomal-STRs mutations equivocal parental origin been assigned? Forensic Science International: Genetics Supplement Series, 2022, 8, pp. 99–101 DOI: 10.1016/j.fsigss.2022.09.035

  8. Antão-Sousa S., Conde-Sousa E., Gusmão L., Amorim A., Pinto, N., Estimations of Mutation Rates Depend on Population Allele Frequency Distribution: The Case of Autosomal Microsatellites Genes, 2022, 13(7), 1248 DOI: 10.3390/genes13071248

  9. Conde-Sousa E., Vale J., Feng M., Xu K., Wang Y., Della Mea V., La Barbera D., Montahaei E., Baghshah M., Turzynski A., Gildenblat J., Klaiman E., Hong Y., Aresta G., Araújo T., Aguiar P., Eloy C., Polónia A., HEROHE Challenge: Predicting HER2 Status in Breast Cancer from Hematoxylin–Eosin Whole-Slide Imaging. 2022, J. Imaging, 8, 213. DOI: 10.3390/jimaging8080213

  10. Pereira-Castro I., Garcia B., Curinha A., Neves-Costa A., Conde-Sousa E., Moita L., Moreira A., MCL1 alternative polyadenylation is essential for cell survival and mitochondria morphology (2022) Cellular and Molecular Life Sciences 79, 164. ; DOI: 10.1007/s00018-022-04172-x

  11. Neto, L., Pinto, N., Proença, A., Amorim, A., Conde-Sousa, E., 4SpecID: Reference DNA Libraries Auditing and Annotation System for Forensic Applications (2021) Genes, 12, 61.; DOI: 10.3390/genes12010061

  12. Freitas A., Aroso M., Barros A., Fernandez M., Conde-Sousa E., Leite M., Carvalho E., Ribeiro C. C., Ferreira R., Pêgo A. P., Vitorino R., Gomez-Lazaro M., Characterization of the striatal extracellular matrix in a mouse model of Parkinson’s disease (2021) Antioxidants, 10(7), 1095; DOI: 10.3390/antiox10071095

  13. Nelson, G. et al. QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy, (2021) J. Microscopy; DOI: 10.1111/jmi.13041 arXiv: arXiv:2101.09153 [q-bio.OT]

  14. La Barbera, D., Polónia, A., Roitero, K., Conde-Sousa , E., Della Mea, V. Detection of HER2 from Haematoxylin-Eosin Slides Through a Cascade of Deep Learning Classifiers via Multi-Instance Learning (2020) J. Imaging, 6(9), 82; DOI: 10.3390/jimaging6090082

  15. Vieira, D., Esteves,S., Santiago,C, Conde-Sousa, E., Fernandes, T., Pais, C., Soares, P., Franco-Duarte, R. Population analysis and evolution of Saccharomyces cerevisiae mitogenomes (2020) Microorganisms, 8(7), 1001; DOI: 10.3390/microorganisms8071001

  16. Conde-Sousa, E., Pinto, N., Amorim, A. Reference DNA databases for forensic species identification: Auditing algorithms (2019) Forensic Science International: Genetics Supplement Series, 7 (1), pp. 564-566. DOI: 10.1016/j.fsigss.2019.10.091

  17. Antão-Sousa, S., Conde-Sousa, E., Gusmão, L., Amorim, A., Pinto, N. Underestimation and misclassification of mutations at X chromosome STRs depend on population’s allelic profile (2019) Forensic Science International: Genetics Supplement Series, 7 (1), pp. 718-720. DOI: 10.1016/j.fsigss.2019.10.150

  18. Barros, D., Conde-Sousa, E., Gonçalves, A.M., Han, W.M., García, A.J., Amaral, I.F., Pêgo, A.P. Engineering hydrogels with affinity-bound laminin as 3D neural stem cell culture systems (2019) Biomaterials Science, 7 (12), pp. 5338-5349. DOI: 10.1039/c9bm00348g

  19. Rito, T., Vieira, D., Silva, M., Conde-Sousa, E., Pereira, L., Mellars, P., Richards, M.B., Soares, P. A dispersal of Homo sapiens from southern to eastern Africa immediately preceded the out-of-Africa migration (2019) Scientific Reports, 9 (1), art. no. 4728. DOI: 10.1038/s41598-019-41176-3

  20. Pinto, N., Simões, R., Amorim, A., Conde-Sousa, E. Optimizing the information increase through the addition of relatives and genetic markers in identification and kinship cases (2019) Forensic Science International: Genetics, 40, pp. 210-218. DOI: 10.1016/j.fsigen.2019.02.019

  21. Barros, D., Parreira, P., Furtado, J., Ferreira-da-Silva, F., Conde-Sousa, E., García, A.J., Martins, M.C.L., Amaral, I.F., Pêgo, A.P. An affinity-based approach to engineer laminin-presenting cell instructive microenvironments (2019) Biomaterials, 192, pp. 601-611. DOI: 10.1016/j.biomaterials.2018.10.039

  22. Machado, P., Gusmão, L., Conde-Sousa, E., Pinto, N. The influence of the different mutation models in kinship evaluation (2017) Forensic Science International: Genetics Supplement Series, 6, pp. e255-e256. DOI: 10.1016/j.fsigss.2017.09.093

  23. Gonçalves, J., Conde-Sousa, E., Egeland, T., Amorim, A., Pinto, N. Key individuals for discerning pedigrees belonging to the same autosomal kinship class (2017) Forensic Science International: Genetics, 29, pp. 71-79. DOI: 10.1016/j.fsigen.2017.03.018

  24. Olivieri, A., Sidore, C., Achilli, A., Angius, A., Posth, C., Furtwängler, A., Brandini, S., Capodiferro, M.R., Gandini, F., Zoledziewska, M., Pitzalis, M., Maschio, A., Busonero, F., Lai, L., Skeates, R., Gradoli, M.G., Beckett, J., Marongiu, M., Mazzarello, V., Marongiu, P., Rubino, S., Rito, T., Macaulay, V., Semino, O., Pala, M., Abecasis, G.R., Schlessinger, D., Conde-Sousa, E., Soares, P., Richards, M.B., Cucca, F., Torroni, A. Mitogenome Diversity in Sardinians: A Genetic Window onto an Island’s Past (2017) Molecular Biology and Evolution, 34 (5), pp. 1230-1239. DOI: 10.1093/molbev/msx082

  25. Conde-Sousa, E., Szücs, P., Peng, H., Aguiar, P. N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions (2017) Neuroinformatics, 15 (1), pp. 5-12. DOI: 10.1007/s12021-016-9308-7

  26. Conde-Sousa, E., Aguiar, P. A working memory model for serial order that stores information in the intrinsic excitability properties of neurons (2013) Journal of Computational Neuroscience, 35 (2), pp. 187-199. DOI: 10.1007/s10827-013-0447-7

  27. Pinto, N., Magalhães, M., Conde-Sousa, E., Gomes, C., Pereira, R., Alves, C., Gusmão, L., Amorim, A. Assessing paternities with inconclusive STR results: The suitability of bi-allelic markers (2013) Forensic Science International: Genetics, 7 (1), pp. 16-21. DOI: 10.1016/j.fsigen.2012.05.002

Publications in conference proceedings

  1. Conde-Sousa E., Aguiar P., Conversion from spatial patterns of activity to sequences of neuronal activations using gate interneurons, BMC Neuroscience, July 2013, 14(Suppl.1) DOI: 10.1186/1471-2202-14-S1-P3

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